Transcript: ENST00000551200.1 NUP37-002

Description

nucleoporin 37kDa [Source:HGNC Symbol;Acc:29929]

Gene Synonyms

FLJ22618, MGC5585, p37

Location

Chromosome 12: 102,470,771-102,513,869 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 17661 variant alleles and maps to 239 oligo probes.

Gene

This transcript is a product of gene ENSG00000075188.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000552283.1	NUP37-001	1286	326aa	ENSP00000448054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9089	F8VXF5 Q8NFH4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000251074.1	NUP37-201	1203	326aa	ENSP00000251074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9089	F8VXF5 Q8NFH4	NM_024057.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551744.2	NUP37-008	762	208aa	ENSP00000448086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VTY2 F8VXF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550459.1	NUP37-005	645	51aa	ENSP00000449982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547269.1	NUP37-006	798	31aa	ENSP00000447284.1	Nonsense mediated decay		H0YHK8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000543021.1	NUP37-003	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548994.1	NUP37-004	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551200.1	NUP37-002	1158	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546385.1	NUP37-007	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,158 bps,

Version

ENST00000551200.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000409333 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000551200.1 NUP37-002

Summary