Transcript: ENST00000396577.3 SLC12A1-001

Description

solute carrier family 12 (sodium/potassium/chloride transporter), member 1 [Source:HGNC Symbol;Acc:10910]

Gene Synonyms

BSC1, NKCC2

Location

Chromosome 15: 48,498,499-48,596,275 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 29 domains and features, is associated with 42188 variant alleles and maps to 824 oligo probes.

Gene

This transcript is a product of gene ENSG00000074803.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396577.3	SLC12A1-001	4708	1099aa	ENSP00000379822.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53940	E9PDW4 O76030	NM_001184832.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380993.3	SLC12A1-201	4707	1099aa	ENSP00000370381.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10129	H0YLJ2 O76029 Q13621	NM_000338.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558405.1	SLC12A1-006	3426	1099aa	ENSP00000453409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10129	H0YLJ2 O76029 Q13621	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559641.1	SLC12A1-005	2176	648aa	ENSP00000453230.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLJ2 O76029	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000330289.6	SLC12A1-002	1764	430aa	ENSP00000331550.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O76029 Q8IUN5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561031.1	SLC12A1-011	735	217aa	ENSP00000454178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YNW0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558805.1	SLC12A1-012	582	103aa	ENSP00000454054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561127.1	SLC12A1-009	664	98aa	ENSP00000453602.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559723.1	SLC12A1-010	509	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560692.1	SLC12A1-008	8632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558252.1	SLC12A1-007	8614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 4,708 bps, Translation length: 1,099 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS53940

Version

ENST00000396577.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254341 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000396577.3 SLC12A1-001

Summary