Transcript: ENST00000398238.4 NSF-001

Description

N-ethylmaleimide-sensitive factor [Source:HGNC Symbol;Acc:8016]

Gene Synonyms

SKD2

Location

Chromosome 17: 44,668,035-44,834,830 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 26 domains and features, is associated with 42736 variant alleles and maps to 1470 oligo probes.

Gene

This transcript is a product of gene ENSG00000073969.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000398238.4	NSF-001	3983	744aa	ENSP00000381293.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42354	B4DFA2 B4DH19 I3L0L3 I3L0N3 I3L2G1 I3L338 P46459 Q96D47	NM_006178.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225282.8	NSF-201	2738	644aa	ENSP00000225282.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DFA2 I3L2G1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000575068.1	NSF-005	2667	739aa	ENSP00000458221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DFA2 B4DH19 I3L0L3 I3L0N3 I3L2G1 I3L338 Q96D47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576346.1	NSF-011	710	136aa	ENSP00000459646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2G1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465370.1	NSF-003	580	180aa	ENSP00000467779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000571172.1	NSF-008	569	161aa	ENSP00000458184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0L3 I3L338	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576040.1	NSF-009	364	44aa	ENSP00000460152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L338	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571864.1	NSF-010	548	81aa	ENSP00000461448.1	Nonsense mediated decay		I3L338 I3L4Q9	-	-
ENST00000486366.1	NSF-002	447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,983 bps, Translation length: 744 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P46459

CCDS

This transcript is a member of the Human CCDS set: CCDS42354

Version

ENST00000398238.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000259348 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000398238.4 NSF-001

Summary