Transcript: ENST00000439188.1 ABCB11-003

Description

ATP-binding cassette, sub-family B (MDR/TAP), member 11 [Source:HGNC Symbol;Acc:42]

Gene Synonyms

ABC16, BRIC2, BSEP, PFIC-2, PFIC2, PGY4, SPGP

Location

About this transcript

This transcript has 15 exons, is annotated with 4 domains and features, is associated with 21250 variant alleles and maps to 499 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263817.6	ABCB11-001	4775	1321aa	ENSP00000263817.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46444	B4DYQ0 O95342 Q53S60 Q9UIL3	NM_003742.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439188.1	ABCB11-003	2822	72aa	ENSP00000416058.1	Nonsense mediated decay		H7C486	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478354.1	ABCB11-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 2, Transcript length: 2,822 bps, Translation length: 72 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000439188.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000333618 (version 2)