Transcript: ENST00000521108.1 HMMR-009

Description

hyaluronan-mediated motility receptor (RHAMM) [Source:HGNC Symbol;Acc:5012]

Gene Synonyms

CD168, IHABP, RHAMM

Location

Chromosome 5: 162,887,659-162,892,214 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2028 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000072571.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393915.4	HMMR-001	3098	725aa	ENSP00000377492.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47334	B9UCQ3 E3W978 E5RI30 E5RIH2 O75330	NM_012484.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358715.3	HMMR-002	2988	724aa	ENSP00000351554.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4362	B9UCQ3 E3W978 E5RI30 E5RIH2 O75330	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353866.3	HMMR-003	2872	709aa	ENSP00000185942.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4363	B9UCQ3 E3W978 E5RI30 E5RIH2 O75330	NM_012485.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432118.2	HMMR-006	2084	638aa	ENSP00000402673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47335	E3W978 E5RI30 E5RIH2 O75330	NM_001142557.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520345.1	HMMR-007	720	101aa	ENSP00000428481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RI30 E5RIH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522094.1	HMMR-008	609	92aa	ENSP00000428406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521108.1	HMMR-009	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517936.1	HMMR-010	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 671 bps,

Version

ENST00000521108.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000374166 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000521108.1 HMMR-009

Summary