Transcript: ENST00000361434.3 LPHN1-002

Description

latrophilin 1 [Source:HGNC Symbol;Acc:20973]

Gene Synonyms

CIRL1, CL1, KIAA0821, LEC2

Location

Chromosome 19: 14,260,765-14,316,981 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 46 domains and features, is associated with 28817 variant alleles and maps to 673 oligo probes.

Gene

This transcript is a product of gene ENSG00000072071.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340736.6	LPHN1-001	5658	1474aa	ENSP00000340688.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32928	O94910	NM_001008701.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361434.3	LPHN1-002	5610	1469aa	ENSP00000355328.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12307	O94910	NM_014921.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000592164.1	LPHN1-005	791	264aa	ENSP00000465453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000593005.1	LPHN1-006	729	243aa	ENSP00000468197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000589616.1	LPHN1-004	675	225aa	ENSP00000468711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESH3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000591528.1	LPHN1-007	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000588677.1	LPHN1-008	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590223.1	LPHN1-003	424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 5,610 bps, Translation length: 1,469 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94910

CCDS

This transcript is a member of the Human CCDS set: CCDS12307

Version

ENST00000361434.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000459697 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000361434.3 LPHN1-002

Summary