Transcript: ENST00000490480.1 FAM50A-003

Description

family with sequence similarity 50, member A [Source:HGNC Symbol;Acc:18786]

Gene Synonyms

9F, DXS9928E, HXC-26, HXC26, XAP5

Location

Chromosome X: 153,673,791-153,674,230 forward strand.

About this transcript

This transcript has 2 exons, is associated with 141 variant alleles and maps to 135 oligo probes.

Gene

This transcript is a product of gene ENSG00000071859.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393600.3	FAM50A-001	1352	339aa	ENSP00000377225.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14751	B0S8I6 Q14320 Q6PJH5	NM_004699.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000158526.9	FAM50A-002	1240	260aa	ENSP00000158526.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B0S8I6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464419.1	FAM50A-005	1470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481619.1	FAM50A-007	763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478509.1	FAM50A-004	682	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490480.1	FAM50A-003	346	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494278.1	FAM50A-006	294	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 346 bps,

Version

ENST00000490480.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000081645 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000490480.1 FAM50A-003

Summary