Transcript: ENST00000473473.1 BCL3-008

Description

B-cell CLL/lymphoma 3 [Source:HGNC Symbol;Acc:998]

Gene Synonyms

BCL4, D19S37, hsa-mir-8085

Location

Chromosome 19: 45,261,785-45,262,815 forward strand.

About this transcript

This transcript has 2 exons, is associated with 744 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSG00000069399.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000164227.5	BCL3-001	2038	454aa	ENSP00000164227.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12642	P20749	NM_005178.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444487.1	BCL3-005	923	308aa	ENSP00000393731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000487394.1	BCL3-002	603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473468.1	BCL3-004	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000403534.3	BCL3-003	1714	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474300.1	BCL3-006	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473473.1	BCL3-008	445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464319.1	BCL3-007	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477832.1	BCL3-009	385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 445 bps,

Version

ENST00000473473.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322983 (version 1)

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Transcript: ENST00000473473.1 BCL3-008

Summary