Transcript: ENST00000562420.1 VPS35-011

Description

vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13487]

Gene Synonyms

FLJ10752, MEM3, PARK17

Location

Chromosome 16: 46,695,739-46,703,126 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 3072 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000069329.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299138.7	VPS35-001	6780	796aa	ENSP00000299138.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10721	Q96QK1	NM_018206.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568784.2	VPS35-002	4017	48aa	ENSP00000456274.2	Nonsense mediated decay		H3BRJ7	-	-
ENST00000568612.1	VPS35-008	697	41aa	ENSP00000461469.1	Nonsense mediated decay		I3L4S0	-	-
ENST00000561713.1	VPS35-005	589	47aa	ENSP00000461423.1	Nonsense mediated decay		I3L4P4	-	-
ENST00000568642.1	VPS35-012	447	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569950.1	VPS35-003	1096	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563984.1	VPS35-004	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563884.1	VPS35-006	759	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562420.1	VPS35-011	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568191.1	VPS35-007	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565228.1	VPS35-010	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 740 bps,

Version

ENST00000562420.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430592 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000562420.1 VPS35-011

Summary