Transcript: ENST00000409024.3 POLR1A-004

Description

polymerase (RNA) I polypeptide A, 194kDa [Source:HGNC Symbol;Acc:17264]

Gene Synonyms

A190, DKFZP586M0122, FLJ21915, RPA1, RPA194, RPO1-4, RPO14

Location

Chromosome 2: 86,310,205-86,332,997 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 9779 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSG00000068654.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263857.6	POLR1A-001	12749	1720aa	ENSP00000263857.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42706	B7Z8X7 O95602 Q53T12 Q96AG9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409681.1	POLR1A-002	6454	1659aa	ENSP00000386300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B9ZVN9	NM_015425.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424089.1	POLR1A-005	576	42aa	ENSP00000397321.1	Nonsense mediated decay		F2Z3I7	-	-
ENST00000409024.3	POLR1A-004	560	42aa	ENSP00000386423.3	Nonsense mediated decay		F2Z3I7	-	-
ENST00000483538.1	POLR1A-006	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492034.1	POLR1A-009	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496892.1	POLR1A-010	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462078.1	POLR1A-008	469	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471427.1	POLR1A-011	290	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486964.1	POLR1A-003	1427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 560 bps, Translation length: 42 residues

Version

ENST00000409024.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000329833 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000409024.3 POLR1A-004

Summary