Transcript: ENST00000393240.3 SYT1-002

Description

synaptotagmin I [Source:HGNC Symbol;Acc:11509]

Gene Synonyms

P65, SVP65, SYT

Location

Chromosome 12: 79,257,773-79,844,059 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 248367 variant alleles and maps to 463 oligo probes.

Gene

This transcript is a product of gene ENSG00000067715.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261205.4	SYT1-001	4808	422aa	ENSP00000261205.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9017	C9JX50 F8VP93 F8VYH8 F8VZY3 F8W1U9 P21579	NM_005639.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457153.2	SYT1-004	4592	419aa	ENSP00000391056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP93 F8VXH0 F8VYH8 F8VZY3 F8W1U9 J3KQA0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393240.3	SYT1-002	3095	422aa	ENSP00000376932.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9017	C9JX50 F8VP93 F8VYH8 F8VZY3 F8W1U9 P21579	NM_001135805.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000552744.1	SYT1-005	2718	422aa	ENSP00000447575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9017	C9JX50 F8VP93 F8VYH8 F8VZY3 F8W1U9 P21579	NM_001135806.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446242.2	SYT1-003	762	181aa	ENSP00000401559.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JX50 F8VP93 F8VYH8 F8VZY3 F8W1U9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552624.1	SYT1-012	726	173aa	ENSP00000448861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP93 F8VXH0 F8VYH8 F8VZY3 F8W1U9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549671.1	SYT1-010	710	72aa	ENSP00000450321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP93 F8VYH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000552074.1	SYT1-007	702	94aa	ENSP00000447035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP93 F8VYH8 F8VZY3 F8W1U9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000551304.1	SYT1-011	579	72aa	ENSP00000447656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VP93 F8VYH8 F8VZY3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549559.1	SYT1-013	556	185aa	ENSP00000449415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000547046.1	SYT1-009	506	58aa	ENSP00000448964.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VYH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549454.1	SYT1-008	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 8, Transcript length: 3,095 bps, Translation length: 422 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P21579

CCDS

This transcript is a member of the Human CCDS set: CCDS9017

Version

ENST00000393240.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000259416 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000393240.3 SYT1-002

Summary