Transcript: ENST00000396083.2 THUMPD1-002

Description

THUMP domain containing 1 [Source:HGNC Symbol;Acc:23807]

Gene Synonyms

DKFZp686C1054, FLJ20274

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 3176 variant alleles and maps to 363 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381337.2	THUMPD1-001	4122	353aa	ENSP00000370741.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10588	B4DFY9 O60362 Q9NXG2	NM_017736.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431224.2	THUMPD1-201	4117	439aa	ENSP00000392282.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DFY9 J3KQB0 O60362	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396083.2	THUMPD1-002	2624	353aa	ENSP00000379392.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10588	B4DFY9 O60362 Q9NXG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565248.1	THUMPD1-005	1099	145aa	ENSP00000455033.1	Nonsense mediated decay		H3BNW0	-	-
ENST00000570231.1	THUMPD1-003	1040	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569768.1	THUMPD1-004	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,624 bps, Translation length: 353 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NXG2

CCDS

This transcript is a member of the Human CCDS set: CCDS10588

Version

ENST00000396083.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000435918 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.