Transcript: ENST00000302445.3 KARS-001

Description

lysyl-tRNA synthetase [Source:HGNC Symbol;Acc:6215]

Gene Synonyms

CMTRIB, DFNB89, KARS1, KARS2, KIAA0070, KRS

Location

Chromosome 16: 75,661,622-75,681,577 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 19 domains and features, is associated with 11660 variant alleles and maps to 777 oligo probes.

Gene

This transcript is a product of gene ENSG00000065427.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319410.5	KARS-002	2171	625aa	ENSP00000325448.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45532	H3BVA8 J3KRL2 Q15046	NM_001130089.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302445.3	KARS-001	2005	597aa	ENSP00000303043.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10923	J3KRL2 Q15046	NM_005548.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570215.1	KARS-012	994	256aa	ENSP00000458028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BVA8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568682.1	KARS-007	870	102aa	ENSP00000462057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRL2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566772.1	KARS-011	644	104aa	ENSP00000455488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPV7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568378.1	KARS-009	459	67aa	ENSP00000454512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMR9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564578.1	KARS-004	1942	124aa	ENSP00000455818.1	Nonsense mediated decay		H3BQK5	-	-
ENST00000562875.1	KARS-006	801	76aa	ENSP00000456185.1	Nonsense mediated decay		H3BRC9	-	-
ENST00000566249.1	KARS-008	649	86aa	ENSP00000456786.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566560.1	KARS-003	1231	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565738.1	KARS-010	607	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569298.1	KARS-013	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,005 bps, Translation length: 597 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15046

CCDS

This transcript is a member of the Human CCDS set: CCDS10923

Version

ENST00000302445.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000269023 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000302445.3 KARS-001

Summary