Transcript: ENST00000264012.4 CDH3-001

Description

cadherin 3, type 1, P-cadherin (placental) [Source:HGNC Symbol;Acc:1762]

Gene Synonyms

CDHP, HJMD, PCAD

Location

Chromosome 16: 68,678,739-68,732,971 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 45 domains and features, is associated with 25972 variant alleles and maps to 618 oligo probes.

Gene

This transcript is a product of gene ENSG00000062038.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264012.4	CDH3-001	3702	829aa	ENSP00000264012.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10868	J3KTE9 P22223	NM_001793.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429102.2	CDH3-002	3611	784aa	ENSP00000398485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P22223	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581171.1	CDH3-201	2746	774aa	ENSP00000462948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTE9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568292.1	CDH3-005	570	155aa	ENSP00000463364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569080.1	CDH3-010	291	81aa	ENSP00000463415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QL75	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000542274.1	CDH3-003	2746	48aa	ENSP00000464021.1	Nonsense mediated decay		J3QR34	-	-
ENST00000567674.1	CDH3-009	892	41aa	ENSP00000463267.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000566808.2	CDH3-006	573	73aa	ENSP00000462111.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569036.2	CDH3-007	563	59aa	ENSP00000464058.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569117.1	CDH3-008	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565453.1	CDH3-004	532	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,702 bps, Translation length: 829 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P22223

CCDS

This transcript is a member of the Human CCDS set: CCDS10868

Version

ENST00000264012.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268896 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264012.4 CDH3-001

Summary