Transcript: ENST00000434521.1 PRDM6-003

Description

PR domain containing 6 [Source:HGNC Symbol;Acc:9350]

Gene Synonyms

PFM3

Location

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 35153 variant alleles and maps to 143 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000407847.4	PRDM6-001	9267	595aa	ENSP00000384725.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47259	Q9NQX0	NM_001136239.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434521.1	PRDM6-003	699	73aa	ENSP00000390919.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000464424.1	PRDM6-002	514	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000427739.1	PRDM6-004	256	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 699 bps, Translation length: 73 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000434521.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318228 (version 1)