Transcript: ENST00000578109.1 PCGF2-003

Description

polycomb group ring finger 2 [Source:HGNC Symbol;Acc:12929]

Gene Synonyms

MEL-18, MEL18, RNF110, ZNF144

Location

Chromosome 17: 36,891,365-36,904,606 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 5 domains and features, is associated with 6255 variant alleles and maps to 331 oligo probes.

Gene

This transcript is a product of gene ENSG00000056661.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000580830.1	PCGF2-002	3062	344aa	ENSP00000461961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000360797.2	PCGF2-201	2604	344aa	ENSP00000354033.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	NM_007144.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581345.1	PCGF2-005	2179	344aa	ENSP00000463440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32638	P35227	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579882.1	PCGF2-001	1534	257aa	ENSP00000464553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT13 J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585100.1	PCGF2-004	1499	257aa	ENSP00000462755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT13 J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578109.1	PCGF2-003	1196	203aa	ENSP00000464513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS42	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578487.1	PCGF2-006	459	66aa	ENSP00000462537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,196 bps, Translation length: 203 residues

Version

ENST00000578109.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs1138349, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442248 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000578109.1 PCGF2-003

Summary