Transcript: ENST00000313654.9 LAMA3-001

Description

laminin, alpha 3 [Source:HGNC Symbol;Acc:6483]

Gene Synonyms

BM600, BM600-150kDa, E170, LAMNA, LOCS, epiligrin, kalinin-165kDa, lama3a, nicein-150kDa

Location

Chromosome 18: 21,269,407-21,535,030 forward strand.

About this transcript

This transcript has 75 exons, is annotated with 150 domains and features, is associated with 105128 variant alleles and maps to 2016 oligo probes.

Gene

This transcript is a product of gene ENSG00000053747.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000313654.9	LAMA3-001	10661	3333aa	ENSP00000324532.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42419	B0YJ32 Q16787	NM_198129.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399516.3	LAMA3-003	9834	3277aa	ENSP00000382432.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45838	Q16787	NM_001127717.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000269217.6	LAMA3-002	5671	1724aa	ENSP00000269217.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11880	B0YJ33	NM_000227.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000587184.1	LAMA3-004	5007	1668aa	ENSP00000466557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59307	Q16787	NM_001127718.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586751.1	LAMA3-011	3494	1147aa	ENSP00000464836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588164.1	LAMA3-010	773	95aa	ENSP00000467473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000592519.1	LAMA3-016	590	59aa	ENSP00000467662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588004.1	LAMA3-012	554	134aa	ENSP00000468315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590104.1	LAMA3-014	462	37aa	ENSP00000466658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585600.1	LAMA3-005	1815	576aa	ENSP00000468316.1	Non stop decay		Q566Q1	-	-
ENST00000588770.1	LAMA3-006	4921	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000586709.1	LAMA3-007	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000591749.1	LAMA3-015	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592442.1	LAMA3-008	473	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 75, Coding exons: 75, Transcript length: 10,661 bps, Translation length: 3,333 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16787

CCDS

This transcript is a member of the Human CCDS set: CCDS42419

Version

ENST00000313654.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000254824 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000313654.9 LAMA3-001

Summary