Transcript: ENST00000011700.6 VPS13D-014

Description

vacuolar protein sorting 13 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:23595]

Gene Synonyms

FLJ10619, KIAA0453

Location

Chromosome 1: 12,337,178-12,570,415 forward strand.

About this transcript

This transcript has 52 exons, is annotated with 19 domains and features, is associated with 95750 variant alleles and maps to 1214 oligo probes.

Gene

This transcript is a product of gene ENSG00000048707.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358136.3	VPS13D-001	16318	4388aa	ENSP00000350854.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30588	J3KP14 M0QXS2	NM_015378.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356315.4	VPS13D-003	16243	4363aa	ENSP00000348666.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30589	B1AJZ2 M0QXS2 Q5THJ4	NM_018156.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000011700.6	VPS13D-014	10969	3210aa	ENSP00000011700.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXS2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471923.1	VPS13D-006	3836	44aa	ENSP00000469344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543766.1	VPS13D-202	2498	386aa	ENSP00000441122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX56 M0QXS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543710.1	VPS13D-201	1505	192aa	ENSP00000444120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZY2 M0QXS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466732.2	VPS13D-010	377	45aa	ENSP00000473375.1	Nonsense mediated decay		R4GMW1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000496628.1	VPS13D-005	5674	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460333.1	VPS13D-002	4910	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487188.1	VPS13D-004	3990	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000469054.1	VPS13D-009	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476169.1	VPS13D-007	475	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489961.1	VPS13D-008	443	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476045.1	VPS13D-013	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481484.1	VPS13D-011	360	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473099.1	VPS13D-012	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 52, Coding exons: 52, Transcript length: 10,969 bps, Translation length: 3,210 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000011700.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354898 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000011700.6 VPS13D-014

Summary