Transcript: ENST00000295802.4 RETSAT-001

Description

retinol saturase (all-trans-retinol 13,14-reductase) [Source:HGNC Symbol;Acc:25991]

Gene Synonyms

FLJ20296, PPSIG, RetSat

Location

Chromosome 2: 85,569,211-85,581,743 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 5916 variant alleles and maps to 688 oligo probes.

Gene

This transcript is a product of gene ENSG00000042445.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295802.4	RETSAT-001	3100	610aa	ENSP00000295802.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1972	I0EZ74 Q6NUM9	NM_017750.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263854.6	RETSAT-201	2834	481aa	ENSP00000263854.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NUM9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457495.2	RETSAT-202	1802	549aa	ENSP00000405040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E9N3 I0EZ74	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449375.1	RETSAT-004	1759	399aa	ENSP00000412166.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I0EZ74	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000409984.2	RETSAT-007	765	255aa	ENSP00000387196.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000429806.1	RETSAT-002	2335	320aa	ENSP00000388202.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000438611.4	RETSAT-003	1500	140aa	ENSP00000444814.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475624.2	RETSAT-008	677	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482694.1	RETSAT-006	601	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490291.1	RETSAT-005	660	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,100 bps, Translation length: 610 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NUM9

CCDS

This transcript is a member of the Human CCDS set: CCDS1972

Version

ENST00000295802.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252489 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000295802.4 RETSAT-001

Summary