Transcript: ENST00000381897.1 RFC1-001

Description

replication factor C (activator 1) 1, 145kDa [Source:HGNC Symbol;Acc:9969]

Gene Synonyms

A1, MHCBFB, PO-GA, RECC1, RFC, RFC140

Location

Chromosome 4: 39,289,076-39,367,995 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 22 domains and features, is associated with 33525 variant alleles and maps to 820 oligo probes.

Gene

This transcript is a product of gene ENSG00000035928.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000381897.1	RFC1-001	4886	1148aa	ENSP00000371321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56329	P35251	NM_002913.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000349703.2	RFC1-017	4859	1147aa	ENSP00000261424.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3450	P35251	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514572.1	RFC1-015	584	101aa	ENSP00000424713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000504554.1	RFC1-009	561	187aa	ENSP00000422129.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8U4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000503784.1	RFC1-003	504	132aa	ENSP00000422740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAD2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512275.1	RFC1-004	841	130aa	ENSP00000422475.1	Nonsense mediated decay		E0CX09	-	-
ENST00000418436.1	RFC1-002	1255	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000510783.1	RFC1-012	723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502706.1	RFC1-010	690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502991.1	RFC1-014	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512881.1	RFC1-006	537	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504974.1	RFC1-013	495	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000509084.1	RFC1-008	483	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504849.1	RFC1-005	873	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512726.1	RFC1-007	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505077.1	RFC1-011	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,886 bps, Translation length: 1,148 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35251

CCDS

This transcript is a member of the Human CCDS set: CCDS56329

Version

ENST00000381897.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000216808 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000381897.1 RFC1-001

Summary