Transcript: ENST00000220562.4 EXTL3-001

Description

exostosin-like glycosyltransferase 3 [Source:HGNC Symbol;Acc:3518]

Gene Synonyms

BOTV, EXTL1L, EXTR1, KIAA0519, REGR, RPR, botv

Location

Chromosome 8: 28,558,844-28,611,204 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 22614 variant alleles and maps to 574 oligo probes.

Gene

This transcript is a product of gene ENSG00000012232.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220562.4	EXTL3-001	6483	919aa	ENSP00000220562.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6070	B4DG91 E5RIV6 O43909	NM_001440.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523149.1	EXTL3-002	1779	535aa	ENSP00000428691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DG91 E5RIV6 E7ET85	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521473.1	EXTL3-014	601	201aa	ENSP00000429627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000517738.1	EXTL3-012	529	118aa	ENSP00000430652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIV6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521532.1	EXTL3-009	517	137aa	ENSP00000431013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK02	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522698.1	EXTL3-011	565	75aa	ENSP00000428352.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519886.1	EXTL3-010	803	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518223.1	EXTL3-008	562	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522725.1	EXTL3-004	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520679.1	EXTL3-013	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520940.1	EXTL3-005	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000454906.2	EXTL3-006	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519288.1	EXTL3-003	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000523271.1	EXTL3-007	8257	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 6,483 bps, Translation length: 919 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43909

CCDS

This transcript is a member of the Human CCDS set: CCDS6070

Version

ENST00000220562.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000219987 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000220562.4 EXTL3-001

Summary