Transcript: ENST00000376317.3 PRICKLE3-003

Description

prickle homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:6645]

Gene Synonyms

LMO6

Location

Chromosome X: 49,031,151-49,042,845 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 4420 variant alleles and maps to 505 oligo probes.

Gene

This transcript is a product of gene ENSG00000012211.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376317.3	PRICKLE3-003	2814	615aa	ENSP00000365494.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14320	F5H4N2 O43900	NM_006150.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536904.1	PRICKLE3-201	2244	534aa	ENSP00000441385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z8F2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540849.1	PRICKLE3-203	2148	547aa	ENSP00000446051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4N2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453382.1	PRICKLE3-001	1937	628aa	ENSP00000388599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4N2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000538114.1	PRICKLE3-202	1392	439aa	ENSP00000441743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWQ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432913.1	PRICKLE3-004	990	330aa	ENSP00000390620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000376310.3	PRICKLE3-005	806	173aa	ENSP00000365487.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6ND81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417014.1	PRICKLE3-002	545	150aa	ENSP00000401337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYV3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,814 bps, Translation length: 615 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43900

CCDS

This transcript is a member of the Human CCDS set: CCDS14320

Version

ENST00000376317.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000060811 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000376317.3 PRICKLE3-003

Summary