Transcript: ENST00000466729.1 TTC19-012

Description

tetratricopeptide repeat domain 19 [Source:HGNC Symbol;Acc:26006]

Gene Synonyms

2010204O13Rik, FLJ20343, MC3DN2, MGC19520

Location

Chromosome 17: 15,903,098-15,907,565 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 2155 variant alleles and maps to 250 oligo probes.

Gene

This transcript is a product of gene ENSG00000011295.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261647.5	TTC19-001	3002	380aa	ENSP00000261647.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11174	Q6DKK2	NM_017775.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486880.2	TTC19-201	2784	501aa	ENSP00000436056.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6DKK2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470649.1	TTC19-010	760	99aa	ENSP00000465627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKH7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578103.1	TTC19-014	561	63aa	ENSP00000468372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475723.1	TTC19-002	2591	166aa	ENSP00000465754.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466729.1	TTC19-012	908	172aa	ENSP00000466261.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000470399.1	TTC19-008	636	149aa	ENSP00000465082.1	Nonsense mediated decay		K7EJA1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497842.2	TTC19-009	1360	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481107.1	TTC19-005	3075	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465567.1	TTC19-006	2801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583704.1	TTC19-015	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 908 bps, Translation length: 172 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000466729.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444700 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000466729.1 TTC19-012

Summary