Transcript: ENST00000356634.3 KDM1A-001

Description

lysine (K)-specific demethylase 1A [Source:HGNC Symbol;Acc:29079]

Gene Synonyms

AOF2, BHC110, KDM1, KIAA0601, LSD1

Location

Chromosome 1: 23,345,941-23,410,182 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 24 domains and features, is associated with 26527 variant alleles and maps to 634 oligo probes.

Gene

This transcript is a product of gene ENSG00000004487.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000400181.4	KDM1A-002	3059	876aa	ENSP00000383042.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53278	O60341	NM_001009999.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542151.1	KDM1A-201	3058	876aa	ENSP00000439072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6S0T5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356634.3	KDM1A-001	3033	852aa	ENSP00000349049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30627	O60341	NM_015013.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494920.1	KDM1A-004	905	301aa	ENSP00000473294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMP9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000465864.1	KDM1A-005	568	189aa	ENSP00000473297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMQ1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000602503.1	KDM1A-006	2810	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481879.1	KDM1A-003	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 3,033 bps, Translation length: 852 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60341

CCDS

This transcript is a member of the Human CCDS set: CCDS30627

Version

ENST00000356634.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000008880 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000356634.3 KDM1A-001

Summary