Transcript: ENST00000473969.2 USF1-004

Description

upstream transcription factor 1 [Source:HGNC Symbol;Acc:12593]

Gene Synonyms

BHLHB11, FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF, USF, bHLHb11

Location

Chromosome 1: 161,009,710-161,015,752 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 2 domains and features, is associated with 2974 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000158773.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368021.3	USF1-001	1807	310aa	ENSP00000357000.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1214	E9PJ52 E9PQA2 P22415	NM_007122.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435396.1	USF1-201	1765	251aa	ENSP00000390109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQA2 P22415	NM_207005.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368020.1	USF1-002	1717	310aa	ENSP00000356999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1214	E9PJ52 E9PQA2 P22415	NM_001276373.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368019.1	USF1-003	998	282aa	ENSP00000356998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AQP1 E9PJ52	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531842.1	USF1-011	720	217aa	ENSP00000435005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJ52 E9PME6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534633.1	USF1-008	610	105aa	ENSP00000432533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQA2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528768.1	USF1-009	505	165aa	ENSP00000433041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473969.2	USF1-004	1092	48aa	ENSP00000435671.1	Nonsense mediated decay		E9PJ52	-	-
ENST00000472217.1	USF1-005	1097	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496363.1	USF1-006	990	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491629.1	USF1-007	933	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529476.1	USF1-010	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 4, Transcript length: 1,092 bps, Translation length: 48 residues

Version

ENST00000473969.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000077056 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000473969.2 USF1-004

Summary