Transcript: ENST00000553751.1 FOXA1-003

Description

forkhead box A1 [Source:HGNC Symbol;Acc:5021]

Gene Synonyms

HNF3A, TCF3A

Location

About this transcript

This transcript has 3 exons, is associated with 1504 variant alleles and maps to 69 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000250448.2	FOXA1-001	2862	472aa	ENSP00000250448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9665	B7ZAP5 P55317	NM_004496.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540786.1	FOXA1-201	1792	439aa	ENSP00000440178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZAP5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553751.1	FOXA1-003	507	36aa	ENSP00000451704.1	Nonsense mediated decay		G3V4B9	-	-
ENST00000545425.2	FOXA1-002	1806	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554607.1	FOXA1-004	789	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000557418.1	FOXA1-005	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 507 bps, Translation length: 36 residues

Version

ENST00000553751.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411129 (version 1)