Transcript: ENST00000409792.3 SETD2-001

Description

SET domain containing 2 [Source:HGNC Symbol;Acc:18420]

Gene Synonyms

FLJ23184, HBP231, HIF-1, HIF1, HIP-1, HYPB, KIAA1732, KMT3A, SET2, p231HBP

Location

Chromosome 3: 47,058,179-47,205,457 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 38 domains and features, is associated with 78730 variant alleles and maps to 777 oligo probes.

Gene

This transcript is a product of gene ENSG00000181555.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409792.3	SETD2-001	8142	2564aa	ENSP00000386759.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2749	C9JG86 Q9BYW2	NM_014159.6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000412450.1	SETD2-006	4231	1340aa	ENSP00000416401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG86	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000330022.7	SETD2-003	8172	1365aa	ENSP00000332415.7	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000431180.1	SETD2-004	7555	1290aa	ENSP00000388349.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000445387.1	SETD2-002	7075	1675aa	ENSP00000411901.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000492397.1	SETD2-008	746	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479832.1	SETD2-009	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484689.1	SETD2-007	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 8,142 bps, Translation length: 2,564 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BYW2

CCDS

This transcript is a member of the Human CCDS set: CCDS2749

Version

ENST00000409792.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257479 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409792.3 SETD2-001

Summary