Transcript: ENST00000431180.1 SETD2-004

Description

SET domain containing 2 [Source:HGNC Symbol;Acc:18420]

Gene Synonyms

FLJ23184, HBP231, HIF-1, HIF1, HIP-1, HYPB, KIAA1732, KMT3A, SET2, p231HBP

Location

Chromosome 3: 47,057,919-47,165,277 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 12 domains and features, is associated with 60233 variant alleles and maps to 811 oligo probes.

Gene

This transcript is a product of gene ENSG00000181555.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409792.3	SETD2-001	8142	2564aa	ENSP00000386759.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2749	C9JG86 Q9BYW2	NM_014159.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412450.1	SETD2-006	4231	1340aa	ENSP00000416401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JG86	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000330022.7	SETD2-003	8172	1365aa	ENSP00000332415.7	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000431180.1	SETD2-004	7555	1290aa	ENSP00000388349.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000445387.1	SETD2-002	7075	1675aa	ENSP00000411901.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000492397.1	SETD2-008	746	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479832.1	SETD2-009	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484689.1	SETD2-007	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 4, Transcript length: 7,555 bps, Translation length: 1,290 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000431180.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000277106 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000431180.1 SETD2-004

Summary