Transcript: ENST00000355710.3 RET-001

Description

ret proto-oncogene [Source:HGNC Symbol;Acc:9967]

Gene Synonyms

CDHF12, CDHR16, HSCR1, MEN2A, MEN2B, MTC1, PTC, RET-ELE1, RET51

Location

About this transcript

This transcript has 20 exons, is annotated with 26 domains and features, is associated with 36506 variant alleles and maps to 903 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355710.3	RET-001	5659	1114aa	ENSP00000347942.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7200	P07949 Q8IZR8 Q8NFE8 Q9UE13 Q9UM90 Q9UQV8	NM_020975.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000340058.5	RET-002	4149	1072aa	ENSP00000344798.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53525	B4DGX8 P07949 Q8IZR8 Q8NFE8 Q9UE13 Q9UQV8	NM_020630.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000498820.1	RET-003	729	181aa	ENSP00000419080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYL6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479913.1	RET-004	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 5,659 bps, Translation length: 1,114 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P07949

CCDS

This transcript is a member of the Human CCDS set: CCDS7200

Version

ENST00000355710.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000047694 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.