Transcript: ENST00000354822.5 NKX2-1-002

Description

NK2 homeobox 1 [Source:HGNC Symbol;Acc:11825]

Gene Synonyms

BCH, BHC, NK-2, NKX2.1, NKX2A, TEBP, TITF1, TTF-1, TTF1

Location

Chromosome 14: 36,985,602-36,989,433 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 17 domains and features, is associated with 3385 variant alleles and maps to 443 oligo probes.

Gene

This transcript is a product of gene ENSG00000136352.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354822.5	NKX2-1-002	2186	401aa	ENSP00000346879.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41945	P43699 Q13306	NM_001079668.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000518149.1	NKX2-1-004	2583	371aa	ENSP00000428341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000498187.2	NKX2-1-001	2330	371aa	ENSP00000429607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	NM_003317.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522719.2	NKX2-1-003	1417	371aa	ENSP00000429519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9659	P43699	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000546983.1	NKX2-1-005	653	34aa	ENSP00000449302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVG2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,186 bps, Translation length: 401 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P43699

CCDS

This transcript is a member of the Human CCDS set: CCDS41945

Version

ENST00000354822.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000276689 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000354822.5 NKX2-1-002

Summary