Transcript: ENST00000322213.4 SMC1A-001

Description

structural maintenance of chromosomes 1A [Source:HGNC Symbol;Acc:11111]

Gene Synonyms

CDLS2, DXS423E, KIAA0178, SB1.8, SMC1, SMC1L1, SMC1alpha, SMCB, Smcb

Location

Chromosome X: 53,401,070-53,449,677 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 31 domains and features, is associated with 15475 variant alleles and maps to 1079 oligo probes.

Gene

This transcript is a product of gene ENSG00000072501.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322213.4	SMC1A-001	9784	1233aa	ENSP00000323421.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14352	Q14683	NM_006306.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000375340.6	SMC1A-201	1761	516aa	ENSP00000364489.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G8JLG1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000428014.1	SMC1A-003	868	262aa	ENSP00000413509.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y7K8 Q5H934	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000470241.2	SMC1A-005	838	279aa	ENSP00000476416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000463684.1	SMC1A-002	880	54aa	ENSP00000476958.1	Nonsense mediated decay		-	-	-
ENST00000469129.1	SMC1A-004	847	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 9,784 bps, Translation length: 1,233 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14683

CCDS

This transcript is a member of the Human CCDS set: CCDS14352

Version

ENST00000322213.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000056756 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000322213.4 SMC1A-001

Summary