Transcript: ENST00000316448.5 CALR-001

Description

calreticulin [Source:HGNC Symbol;Acc:1455]

Gene Synonyms

CRT, CRTC, FLJ26680, HEL-S-99n, RO, SSA, cC1qR

Location

Chromosome 19: 13,049,421-13,055,303 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 4036 variant alleles and maps to 590 oligo probes.

Gene

This transcript is a product of gene ENSG00000179218.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316448.5	CALR-001	1903	417aa	ENSP00000320866.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12288	B4E2Y9 P27797	NM_004343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000586760.1	CALR-006	913	163aa	ENSP00000465918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588454.1	CALR-008	776	247aa	ENSP00000465105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586967.1	CALR-007	394	13aa	ENSP00000466037.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587486.2	CALR-003	957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590325.1	CALR-004	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586803.1	CALR-005	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,903 bps, Translation length: 417 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P27797

CCDS

This transcript is a member of the Human CCDS set: CCDS12288

Version

ENST00000316448.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000451952 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000316448.5 CALR-001

Summary