Transcript: ENST00000291552.4 U2AF1-001

Description

U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453]

Gene Synonyms

FP793, RN, RNU2AF1, U2AF35, U2AFBP

Location

Chromosome 21: 44,513,066-44,527,697 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 22 domains and features, is associated with 4724 variant alleles and maps to 351 oligo probes.

Gene

This transcript is a product of gene ENSG00000160201.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000291552.4	U2AF1-001	962	240aa	ENSP00000291552.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13694	Q01081	NM_006758.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000459639.1	U2AF1-004	1675	167aa	ENSP00000418705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42948	Q01081	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000398137.1	U2AF1-201	1019	167aa	ENSP00000381205.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42948	Q01081	NM_001025204.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000380276.2	U2AF1-002	940	240aa	ENSP00000369629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33574	Q01081 Q69YM7	NM_001025203.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000464750.1	U2AF1-003	966	75aa	ENSP00000420672.1	Nonsense mediated decay		Q01081	-	-
ENST00000486519.1	U2AF1-010	682	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475639.1	U2AF1-005	4694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496462.1	U2AF1-006	3973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478282.1	U2AF1-007	3344	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471250.1	U2AF1-008	1676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468039.1	U2AF1-011	609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463599.1	U2AF1-009	338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 962 bps, Translation length: 240 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01081

CCDS

This transcript is a member of the Human CCDS set: CCDS13694

Version

ENST00000291552.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000195541 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000291552.4 U2AF1-001

Summary