Transcript: ENST00000286301.3 CSF1R-001

Description

colony stimulating factor 1 receptor [Source:HGNC Symbol;Acc:2433]

Gene Synonyms

C-FMS, CD115, CSF-1R, CSFR, FIM2, FMS, HDLS, M-CSF-R

Location

Chromosome 5: 149,432,854-149,492,935 reverse strand.

About this transcript

This transcript has 22 exons, is annotated with 42 domains and features, is associated with 30028 variant alleles and maps to 749 oligo probes.

Gene

This transcript is a product of gene ENSG00000182578.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000286301.3	CSF1R-001	3989	972aa	ENSP00000286301.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4302	D6RGW1 P07333 Q6LEI2	NM_005211.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000543093.1	CSF1R-201	921	306aa	ENSP00000445282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGW1 P07333	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000511344.1	CSF1R-004	655	49aa	ENSP00000421174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGW1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000504875.1	CSF1R-002	3697	671aa	ENSP00000422212.1	Nonsense mediated decay		D6RGW1 E9PEK4 Q59HE0 Q6LEI2	-	-
ENST00000515068.1	CSF1R-007	723	64aa	ENSP00000427545.1	Nonsense mediated decay		H0YAL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000515239.1	CSF1R-005	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502660.1	CSF1R-003	1388	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000509861.1	CSF1R-008	886	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513609.1	CSF1R-006	711	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 3,989 bps, Translation length: 972 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P07333

CCDS

This transcript is a member of the Human CCDS set: CCDS4302

Version

ENST00000286301.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252329 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000286301.3 CSF1R-001

Summary