Transcript: ENST00000263121.7 SMARCB1-001

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:HGNC Symbol;Acc:11103]

Gene Synonyms

BAF47, INI1, Ini1, MRD15, RDT, RTPS1, SNF5, SNF5L1, Sfh1p, Snr1, hSNFS

Location

Chromosome 22: 24,129,161-24,176,703 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 4 domains and features, is associated with 25315 variant alleles and maps to 456 oligo probes.

Gene

This transcript is a product of gene ENSG00000099956.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263121.7	SMARCB1-001	1690	385aa	ENSP00000263121.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13817	Q12824	NM_003073.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000344921.6	SMARCB1-005	1728	394aa	ENSP00000340883.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E975	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000407422.3	SMARCB1-002	1643	376aa	ENSP00000383984.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46671	Q12824	NM_001007468.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000407082.3	SMARCB1-003	1182	339aa	ENSP00000385226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCL5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000417137.1	SMARCB1-006	889	227aa	ENSP00000388489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTA6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477836.1	SMARCB1-007	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491967.1	SMARCB1-004	605	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,690 bps, Translation length: 385 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12824

CCDS

This transcript is a member of the Human CCDS set: CCDS13817

Version

ENST00000263121.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319872 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000263121.7 SMARCB1-001

Summary