Transcript: ENST00000407082.3 SMARCB1-003

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:HGNC Symbol;Acc:11103]

Gene Synonyms

BAF47, INI1, Ini1, MRD15, RDT, RTPS1, SNF5, SNF5L1, Sfh1p, Snr1, hSNFS

Location

Chromosome 22: 24,129,198-24,176,370 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 3 domains and features, is associated with 24913 variant alleles and maps to 311 oligo probes.

Gene

This transcript is a product of gene ENSG00000099956.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344921.6	SMARCB1-005	1728	394aa	ENSP00000340883.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E975	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000263121.7	SMARCB1-001	1690	385aa	ENSP00000263121.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13817	Q12824	NM_003073.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407422.3	SMARCB1-002	1643	376aa	ENSP00000383984.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46671	Q12824	NM_001007468.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407082.3	SMARCB1-003	1182	339aa	ENSP00000385226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCL5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417137.1	SMARCB1-006	889	227aa	ENSP00000388489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JTA6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000477836.1	SMARCB1-007	660	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491967.1	SMARCB1-004	605	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,182 bps, Translation length: 339 residues

Version

ENST00000407082.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000319874 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000407082.3 SMARCB1-003

Summary