Transcript: ENST00000261769.5 CDH1-001

Description

cadherin 1, type 1, E-cadherin (epithelial) [Source:HGNC Symbol;Acc:1748]

Gene Synonyms

Arc-1, CD324, CDHE, ECAD, LCAM, UVO, uvomorulin

Location

Chromosome 16: 68,771,128-68,869,451 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 51 domains and features, is associated with 54467 variant alleles and maps to 764 oligo probes.

Gene

This transcript is a product of gene ENSG00000039068.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261769.5	CDH1-001	4889	882aa	ENSP00000261769.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10869	B3GN61 P12830	NM_004360.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000422392.2	CDH1-004	2567	821aa	ENSP00000414946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UII8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000566612.1	CDH1-005	4138	537aa	ENSP00000454782.1	Nonsense mediated decay		H3BNC6	-	-
ENST00000566510.1	CDH1-006	2661	414aa	ENSP00000458139.1	Nonsense mediated decay		H3BVI7	-	-
ENST00000561751.1	CDH1-010	736	155aa	ENSP00000463170.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000562836.1	CDH1-002	2759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564676.1	CDH1-003	969	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564745.1	CDH1-007	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562118.1	CDH1-013	952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567320.1	CDH1-012	352	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565810.1	CDH1-011	282	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,889 bps, Translation length: 882 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12830

CCDS

This transcript is a member of the Human CCDS set: CCDS10869

Version

ENST00000261769.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000268897 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000261769.5 CDH1-001

Summary