Transcript: ENST00000566510.1 CDH1-006

Description

cadherin 1, type 1, E-cadherin (epithelial) [Source:HGNC Symbol;Acc:1748]

Gene Synonyms

Arc-1, CD324, CDHE, ECAD, LCAM, UVO, uvomorulin

Location

Chromosome 16: 68,771,255-68,867,439 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 25 domains and features, is associated with 53400 variant alleles and maps to 525 oligo probes.

Gene

This transcript is a product of gene ENSG00000039068.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261769.5	CDH1-001	4889	882aa	ENSP00000261769.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10869	B3GN61 P12830	NM_004360.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422392.2	CDH1-004	2567	821aa	ENSP00000414946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UII8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566612.1	CDH1-005	4138	537aa	ENSP00000454782.1	Nonsense mediated decay		H3BNC6	-	-
ENST00000566510.1	CDH1-006	2661	414aa	ENSP00000458139.1	Nonsense mediated decay		H3BVI7	-	-
ENST00000561751.1	CDH1-010	736	155aa	ENSP00000463170.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000562836.1	CDH1-002	2759	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564676.1	CDH1-003	969	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000564745.1	CDH1-007	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562118.1	CDH1-013	952	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567320.1	CDH1-012	352	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000565810.1	CDH1-011	282	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 9, Transcript length: 2,661 bps, Translation length: 414 residues

Version

ENST00000566510.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000433696 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000566510.1 CDH1-006

Summary