Transcript: ENST00000573234.1 RFC2-001

Description

replication factor C (activator 1) 2, 40kDa [Source:HGNC Symbol;Acc:9970]

Gene Synonyms

A1, RFC40

Location

Chromosome HG1257_PATCH: 73,696,456-73,719,346 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 11 domains and features, is associated with 10419 variant alleles and maps to 522 oligo probes.

Gene

This transcript is a product of gene ENSG00000261911.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000576908.1	RFC2-002	1695	354aa	ENSP00000458995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WDC9 P35250	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000573234.1	RFC2-001	1576	320aa	ENSP00000460590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8WDC9 P35250 Q75MT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574108.1	RFC2-009	957	52aa	ENSP00000459289.1	Nonsense mediated decay	H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570552.1	RFC2-004	881	75aa	ENSP00000461364.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000576356.1	RFC2-006	871	77aa	ENSP00000460399.1	Nonsense mediated decay	F8WC37 F8WDC9	-	-
ENST00000571279.1	RFC2-005	853	101aa	ENSP00000460536.1	Nonsense mediated decay	F8WDC9 H7C5G4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000576280.1	RFC2-012	847	120aa	ENSP00000459726.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570503.2	RFC2-003	782	37aa	ENSP00000458190.1	Nonsense mediated decay	F8WDC9	-	-
ENST00000576165.1	RFC2-011	753	198aa	ENSP00000458880.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000572571.1	RFC2-008	730	87aa	ENSP00000458287.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570653.1	RFC2-010	726	28aa	ENSP00000460697.1	Nonsense mediated decay	H7C5S7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573574.1	RFC2-007	304	90aa	ENSP00000458924.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,576 bps, Translation length: 320 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35250

Version

ENST00000573234.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article. This was projected to the alternate locus via a mapping from the primary assembly.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252458 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000573234.1 RFC2-001

Summary