Transcript: ENST00000562198.1 SLC39A4-006

Description

solute carrier family 39 (zinc transporter), member 4 [Source:HGNC Symbol;Acc:17129]

Gene Synonyms

AEZ, AWMS2, ZIP4

Location

Chromosome HG243_PATCH: 145,467,318-145,468,494 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 924 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSG00000261297.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000569401.1	SLC39A4-001	2174	647aa	ENSP00000456522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NX22	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565606.1	SLC39A4-002	2297	622aa	ENSP00000456328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NX22	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562427.1	SLC39A4-010	583	184aa	ENSP00000456159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562134.1	SLC39A4-009	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000567569.1	SLC39A4-007	498	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000563735.1	SLC39A4-005	2778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000562198.1	SLC39A4-006	795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000561601.1	SLC39A4-004	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 795 bps,

Version

ENST00000562198.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000427067 (version 1)

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Transcript: ENST00000562198.1 SLC39A4-006

Summary