Transcript: ENST00000558481.1 PATL2-004

Description

protein associated with topoisomerase II homolog 2 (yeast) [Source:HGNC Symbol;Acc:33630]

Gene Synonyms

Pat1a, hPat1a

Location

Chromosome 15: 44,962,001-44,967,817 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 2592 variant alleles and maps to 165 oligo probes.

Gene

This transcript is a product of gene ENSG00000229474.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434130.1	PATL2-201	1950	543aa	ENSP00000416673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45253	C9JE40 H0YMQ2	NM_001145112.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560775.1	PATL2-001	1913	543aa	ENSP00000453915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45253	C9JE40 H0YMQ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560780.1	PATL2-003	1863	354aa	ENSP00000453695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMQ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560110.1	PATL2-002	765	125aa	ENSP00000453898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YN77	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558809.1	PATL2-006	531	158aa	ENSP00000453723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMS5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558481.1	PATL2-004	845	188aa	ENSP00000454201.1	Nonsense mediated decay		H0YN77	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558573.1	PATL2-008	2100	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558159.1	PATL2-005	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561082.1	PATL2-007	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 845 bps, Translation length: 188 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000558481.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415952 (version 1)

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Transcript: ENST00000558481.1 PATL2-004

Summary