Transcript: ENST00000380445.3 VPS16-001

Description

vacuolar protein sorting 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14584]

Gene Synonyms

hVPS16

Location

Chromosome 20: 2,821,349-2,847,378 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 10 domains and features, is associated with 13330 variant alleles and maps to 704 oligo probes.

Gene

This transcript is a product of gene ENSG00000215305.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380445.3	VPS16-001	2750	839aa	ENSP00000369810.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13036	A1A4H0 Q9H269	NM_022575.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380469.3	VPS16-003	2318	695aa	ENSP00000369836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13037	A1A4H0 Q9H269	NM_080413.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380443.3	VPS16-006	1825	525aa	ENSP00000369808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1A4H0 Q5JUA8 Q6GMQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453689.1	VPS16-005	966	274aa	ENSP00000417031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUA9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417508.1	VPS16-004	819	226aa	ENSP00000409840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JUB0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000481812.2	VPS16-008	943	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466415.1	VPS16-007	708	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487461.1	VPS16-002	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 2,750 bps, Translation length: 839 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H269

CCDS

This transcript is a member of the Human CCDS set: CCDS13036

Version

ENST00000380445.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000077658 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000380445.3 VPS16-001

Summary