Transcript: ENST00000554289.1 LIN52-005

Description

lin-52 homolog (C. elegans) [Source:HGNC Symbol;Acc:19856]

Gene Synonyms

C14orf46, c14_5549

Location

About this transcript

This transcript has 4 exons, is associated with 5148 variant alleles and maps to 85 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000555028.1	LIN52-001	2774	116aa	ENSP00000451812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32120	B3KN83 Q52LA3	NM_001024674.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554938.1	LIN52-003	566	97aa	ENSP00000452513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554076.1	LIN52-004	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553404.1	LIN52-002	2339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554289.1	LIN52-005	271	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 271 bps,

Version

ENST00000554289.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412320 (version 1)