Transcript: ENST00000462671.1 SLC44A4-003

Description

solute carrier family 44, member 4 [Source:HGNC Symbol;Acc:13941]

Gene Synonyms

C6orf29, CTL4, FLJ14491, NG22

Location

Chromosome 6: 31,842,599-31,846,774 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 1634 variant alleles and maps to 856 oligo probes.

Gene

This transcript is a product of gene ENSG00000204385.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000229729.6	SLC44A4-001	2589	710aa	ENSP00000229729.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4724	Q53GD3	NM_025257.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544672.1	SLC44A4-202	2634	634aa	ENSP00000444109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54989	Q53GD3	NM_001178045.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375562.4	SLC44A4-201	2505	668aa	ENSP00000364712.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54990	Q53GD3	NM_001178044.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000414427.1	SLC44A4-004	1233	411aa	ENSP00000398901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000465707.1	SLC44A4-002	681	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462671.1	SLC44A4-003	426	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487680.1	SLC44A4-007	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479777.1	SLC44A4-006	655	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475563.1	SLC44A4-005	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 426 bps,

Version

ENST00000462671.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000268529 (version 1)

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Transcript: ENST00000462671.1 SLC44A4-003

Summary