Transcript: ENST00000553839.1 SMOC1-003

Description

SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:20318]

Gene Synonyms

OAS

Location

About this transcript

This transcript has 4 exons, is associated with 10432 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361956.3	SMOC1-001	2040	435aa	ENSP00000355110.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32110	Q9H4F8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381280.4	SMOC1-002	3666	434aa	ENSP00000370680.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9798	Q9H4F8	NM_022137.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555917.1	SMOC1-005	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553839.1	SMOC1-003	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557483.1	SMOC1-004	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 551 bps,

Version

ENST00000553839.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412468 (version 1)