Transcript: ENST00000358572.5 TMA16-001

Description

translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638]

Gene Synonyms

C4orf43, FLJ11184

Location

Chromosome 4: 164,415,613-164,441,691 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 10676 variant alleles and maps to 388 oligo probes.

Gene

This transcript is a product of gene ENSG00000198498.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358572.5	TMA16-001	1978	203aa	ENSP00000351380.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43278	D6RA57 Q96EY4	NM_018352.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509657.1	TMA16-003	933	242aa	ENSP00000425347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000513272.1	TMA16-005	803	88aa	ENSP00000426933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RE67	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513134.1	TMA16-006	747	101aa	ENSP00000423901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC31	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508268.1	TMA16-007	608	144aa	ENSP00000423375.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA57	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000511562.1	TMA16-004	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508652.1	TMA16-002	1195	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506214.1	TMA16-008	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503148.1	TMA16-009	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,978 bps, Translation length: 203 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96EY4

CCDS

This transcript is a member of the Human CCDS set: CCDS43278

Version

ENST00000358572.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000365208 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000358572.5 TMA16-001

Summary