Transcript: ENST00000478140.1 SZT2-006

Description

seizure threshold 2 homolog (mouse) [Source:HGNC Symbol;Acc:29040]

Gene Synonyms

C1orf84, EIEE18, FLJ10387, FLJ34502, KIAA0467, RP11-506B15.1, RP11-506B15.3, SZT2A, SZT2B

Location

Chromosome 1: 43,895,513-43,896,368 forward strand.

About this transcript

This transcript has 3 exons, is associated with 500 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSG00000198198.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000562955.1	SZT2-004	12281	3375aa	ENSP00000457168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30694	Q5T011	NM_015284.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372442.1	SZT2-202	10217	2533aa	ENSP00000361519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T011	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310739.4	SZT2-201	1196	180aa	ENSP00000312234.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E2QRB6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372450.4	SZT2-002	1191	178aa	ENSP00000361528.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T011	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000406439.2	SZT2-003	2133	168aa	ENSP00000386070.2	Nonsense mediated decay		Q5T011	-	-
ENST00000471177.1	SZT2-008	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460536.1	SZT2-009	4286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470139.1	SZT2-005	4098	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000357658.3	SZT2-001	1623	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478140.1	SZT2-006	543	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470897.1	SZT2-007	466	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 543 bps,

Version

ENST00000478140.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000091288 (version 1)

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Transcript: ENST00000478140.1 SZT2-006

Summary