Transcript: ENST00000430960.1 HMGN5-006

Description

high mobility group nucleosome binding domain 5 [Source:HGNC Symbol;Acc:8013]

Gene Synonyms

NBP-45, NSBP1

Location

Chromosome X: 80,370,553-80,377,182 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 1937 variant alleles and maps to 254 oligo probes.

Gene

This transcript is a product of gene ENSG00000198157.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358130.2	HMGN5-001	2126	282aa	ENSP00000350848.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14448	P82970 Q5JSK7 Q5JSK8 Q5JSL0	NM_030763.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436386.1	HMGN5-002	859	102aa	ENSP00000413402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7 Q5JSK8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447319.1	HMGN5-004	742	201aa	ENSP00000408060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451455.1	HMGN5-003	720	89aa	ENSP00000404810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430960.1	HMGN5-006	578	148aa	ENSP00000399626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK7 Q5JSK8 Q5JSL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000373250.3	HMGN5-007	572	161aa	ENSP00000362347.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JSK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000491275.1	HMGN5-005	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 578 bps, Translation length: 148 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000430960.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000057359 (version 1)

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Transcript: ENST00000430960.1 HMGN5-006

Summary