Transcript: ENST00000454558.2 ARID5A-004

Description

AT rich interactive domain 5A (MRF1-like) [Source:HGNC Symbol;Acc:17361]

Gene Synonyms

MRF-1, MRF1, RP11-363D14

Location

Chromosome 2: 97,203,082-97,218,371 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 6726 variant alleles and maps to 518 oligo probes.

Gene

This transcript is a product of gene ENSG00000196843.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357485.3	ARID5A-001	2188	594aa	ENSP00000350078.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33251	C9J1Q0 Q03989	NM_212481.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454558.2	ARID5A-004	3079	526aa	ENSP00000400785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1Q0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412735.1	ARID5A-002	2038	58aa	ENSP00000397286.1	Nonsense mediated decay		F6Q9D3	-	-
ENST00000497920.1	ARID5A-005	2357	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467498.1	ARID5A-007	940	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470579.1	ARID5A-006	876	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 3,079 bps, Translation length: 526 residues

Version

ENST00000454558.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338891 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000454558.2 ARID5A-004

Summary