Transcript: ENST00000334409.5 PDCD1-001

Description

programmed cell death 1 [Source:HGNC Symbol;Acc:8760]

Gene Synonyms

CD279, PD-1, PD1, SLEB2, hPD-1, hPD-l

Location

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 5275 variant alleles and maps to 430 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334409.5	PDCD1-001	2114	288aa	ENSP00000335062.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33428	E7ER21 Q15116	NM_005018.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343705.3	PDCD1-003	366	122aa	ENSP00000340808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86TL7	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000418831.1	PDCD1-002	1019	66aa	ENSP00000390296.1	Nonsense mediated decay		E7ER21	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,114 bps, Translation length: 288 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15116

CCDS

This transcript is a member of the Human CCDS set: CCDS33428

Version

ENST00000334409.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000322313 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.